SNP Profiles matching EET 45

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 Key

 1234567891011121314
_Input profile
CTAGCGCTCTACCTGTCTCTATAGCTAG
1._GC-03-017-2-06
CTAGCGCTCTACCTGTCTCTATAGCTAG
2._GC-01-002-1-02
CTAGCGCTCTACCTGTCTCTATAGCTAG
3._GC-01-002-1-02
CTAGCGCTCTACCTGTCTCTATAGCTAG
4._GC-01-002-1-02
CTAGCGCTCTACCTGTCTCTATAGCTAG
5._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
6._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
7._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
8._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
9._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
10._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
11._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
12._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
13._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
14._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
15._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
16._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
17._GC-08-208-6-04
CTAGCGCTCTACCTGTCTCTATAGCTAG
18._GC-08-208-6-04
CTAGCGCTCTACCTGTCTCTATAGCTAG
19._GC-08-208-6-04
CTAGCGCTCTACCTGTCTCTATAGCTAG
20._GC-08-208-6-04
CTAGCGCTCTACCTGTCTCTATAGCTAG
21._GC-08-208-6-04
CTAGCGCTCTACCTGTCTCTATAGCTAG
22._GC-08-209-6-05
CTAGCGCTCTACCTGTCTCTATAGCTAG
23._GC-08-209-6-05
CTAGCGCTCTACCTGTCTCTATAGCTAG
24._GC-08-209-6-05
CTAGCGCTCTACCTGTCTCTATAGCTAG
25._GC-08-209-6-05
CTAGCGCTCTACCTGTCTCTATAGCTAG
26._GC-08-209-6-05
CTAGCGCTCTACCTGTCTCTATAGCTAG
27._GC-08-209-6-05
CTAGCGCTCTACCTGTCTCTATAGCTAG
28._GC-08-209-6-05
CTAGCGCTCTACCTGTCTCTATAGCTAG
29._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
30._GC-08-208-6-04
CTAGCGCTCTACCTGTCTCTATAGCTAG
31._TSH_516
CTAGCGCTCTACCTGTCTCTATAGCTAG
32._GC-08-208-6-04
CTAGCGCTCTACCTGTCTCTATAGCTAG
33._GC-08-088-2-11
CTAGCGCCCTACCCGTCTCTATAGCTAG
34._EET_45_[ECU]
CTAGCGCCCTCCCTGTCTCTAAAGCCAG
35._GC-03-017-2-06
CTAGCGCCCTCCCTGTCTCTAAAGCCAG
36._PA_150_[PER]
CTAGCGCTCTACCCGTCTCTATAGCTAG
37._GC-01-034-2-11
CTAGCGCTCTACCCGTCTCTATAGCTAG
38._GC-01-002-1-02
CTAGCGCCCTCCCTGTCTCTAAAGCCAG
39._GC-01-002-1-02
CTAGCGCCCTCCCTGTCTCTAAAGCCAG
40._RUQ_1018
CTAGCGCTCTACCTGTCTCTATAGCTAG
41._RUQ_1018
_AGCGCT___GT____CTAG
42._MARPER_20
CTAGCGCT-AACT-CT-ATAG-AG
 1516171819202122232425262728
_Input profile
CTATCGCTCTCGGGAGTTACGGGTCTAC
1._GC-03-017-2-06
CTATCGCTCTCGGGAGTTACGGGTCTAC
2._GC-01-002-1-02
CTATCGCTCTCGGGAGTTACGGGTCTAC
3._GC-01-002-1-02
CTATCGCTCTCGGGAGTTACGGGTCTAC
4._GC-01-002-1-02
CTATCGCTCTCGGGAGTTACGGGTCTAC
5._TSH_516
CTATCGCTCTCGGTAGTTACCGGTCTAC
6._TSH_516
CTATCGCTCTCGGTAGTTACCGGTCTAC
7._TSH_516
CTATCGCTCTCGGTAGTTACCGGTCTAC
8._TSH_516
CTATCGCTCTCGGTAGTTACCGGTCTAC
9._TSH_516
CTATCGCTCTCGGTAGTTACCGGTCTAC
10._TSH_516
CTATCGCTCTCGGTAGTTACCGGTCTAC
11._TSH_516
CTATCGCTCTCGGTAGTTACCGGTCTAC
12._TSH_516
CTATCGCTCTCGGTAGTTACCGGTCTAC
13._TSH_516
CTATCGCTCTCGGTAGTTACCGGTCTAC
14._TSH_516
CTATCGCTCTCGGTAGTTACCGGTCTAC
15._TSH_516
CTATCGCTCTCGGTAGTTACCGGTCTAC
16._TSH_516
CTATCGCTCTCGGTAGTTACCGGTCTAC
17._GC-08-208-6-04
CTATCGCTCTCGGTAGTTACCGGTCTAC
18._GC-08-208-6-04
CTATCGCTCTCGGTAGTTACCGGTCTAC
19._GC-08-208-6-04
CTATCGCTCTCGGTAGTTACCGGTCTAC
20._GC-08-208-6-04
CTATCGCTCTCGGTAGTTACCGGTCTAC
21._GC-08-208-6-04
CTATCGCTCTCGGTAGTTACCGGTCTAC
22._GC-08-209-6-05
CTATCGCTCTCGGTAGTTACCGGTCTAC
23._GC-08-209-6-05
CTATCGCTCTCGGTAGTTACCGGTCTAC
24._GC-08-209-6-05
CTATCGCTCTCGGTAGTTACCGGTCTAC
25._GC-08-209-6-05
CTATCGCTCTCGGTAGTTACCGGTCTAC
26._GC-08-209-6-05
CTATCGCTCTCGGTAGTTACCGGTCTAC
27._GC-08-209-6-05
CTATCGCTCTCGGTAGTTACCGGTCTAC
28._GC-08-209-6-05
CTATCGCTCTCGGTAGTTACCGGTCTAC
29._TSH_516
CTATCGCTCTCGGTAG_ACCGGTCTAC
30._GC-08-208-6-04
CTATCGCTCTCGGTAG_ACCGGTCTAC
31._TSH_516
CTATCGCT_CGGT_TT_CGGTCTAC
32._GC-08-208-6-04
CTATCGCT_CGGT_TT_CGGTCTAC
33._GC-08-088-2-11
CTATCCCTCTCGGGAGTTACCCGTCTAC
34._EET_45_[ECU]
CTATCGCTCTCGGGAGTTACCGGTCTAC
35._GC-03-017-2-06
CTATCGCTCTCGGGAGTTACCGGTCTAC
36._PA_150_[PER]
CTATCCCTCTCGGGAGTTACCCGTCTAC
37._GC-01-034-2-11
CTATCCCTCTCGGGAGTTACCCGTCTAC
38._GC-01-002-1-02
CTATCGCTCTCGGGAGTTACCGGTCTAC
39._GC-01-002-1-02
CTATCGCTCTCGGGAGTTACCGGTCTAC
40._RUQ_1018
CTATCGCTCTCGGTGGTTACCGGTCTAC
41._RUQ_1018
____-CGGT_TTACGGGTCTAC
42._MARPER_20
TTATGG-CT-GGAGTT-CG-CTAC
 2930313233343536373839   
_Input profile
AGAGAACCAACCACGTACATCGX_XX_XX_X
1._GC-03-017-2-06
AGAGAACCAACCACGTACATCGX_XX_XX_X
2._GC-01-002-1-02
AGAGAACCAACCACGTACATCGX_XX_XX_X
3._GC-01-002-1-02
AGAGAACCAACCACGTACATCGX_XX_XX_X
4._GC-01-002-1-02
AGAGAACCAACCACGTACATCGX_XX_XX_X
5._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
6._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
7._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
8._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
9._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
10._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
11._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
12._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
13._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
14._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
15._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
16._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
17._GC-08-208-6-04
AGAGAACTAACGACGGACATCGX_XX_XX_X
18._GC-08-208-6-04
AGAGAACTAACGACGGACATCGX_XX_XX_X
19._GC-08-208-6-04
AGAGAACTAACGACGGACATCGX_XX_XX_X
20._GC-08-208-6-04
AGAGAACTAACGACGGACATCGX_XX_XX_X
21._GC-08-208-6-04
AGAGAACTAACGACGGACATCGX_XX_XX_X
22._GC-08-209-6-05
AGAGAACTAACGACGGACATCGX_XX_XX_X
23._GC-08-209-6-05
AGAGAACTAACGACGGACATCGX_XX_XX_X
24._GC-08-209-6-05
AGAGAACTAACGACGGACATCGX_XX_XX_X
25._GC-08-209-6-05
AGAGAACTAACGACGGACATCGX_XX_XX_X
26._GC-08-209-6-05
AGAGAACTAACGACGGACATCGX_XX_XX_X
27._GC-08-209-6-05
AGAGAACTAACGACGGACATCGX_XX_XX_X
28._GC-08-209-6-05
AGAGAACTAACGACGGACATCGX_XX_XX_X
29._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
30._GC-08-208-6-04
AGAGAACTAACGACGGACATCGX_XX_XX_X
31._TSH_516
AGAGAACTAACGACGGACATCGX_XX_XX_X
32._GC-08-208-6-04
AGAGAACTAACGACGGACATCGX_XX_XX_X
33._GC-08-088-2-11
AGAGAACCAACCACGTAAATCGX_XX_XX_X
34._EET_45_[ECU]
AGAGAACCAACCACGTCCATCGX_XX_XX_X
35._GC-03-017-2-06
AGAGAACCAACCACGTCCATCGX_XX_XX_X
36._PA_150_[PER]
AGGGAACCAACCACGTAAATCGX_XX_XX_X
37._GC-01-034-2-11
AGGGAACCAACCACGTAAATCGX_XX_XX_X
38._GC-01-002-1-02
AGAGAACCAACCACGTCCATCGX_XX_XX_X
39._GC-01-002-1-02
AGAGAACCAACCACGTCCATCGX_XX_XX_X
40._RUQ_1018
AGAGAACTAACGACGGACATCGX_XX_XX_X
41._RUQ_1018
AG_AACTAACGACGGAC__X_XX_XX_X
42._MARPER_20
AGGG-CCAA--GT-AT-X_XX_XX_X

Input profile: EET_45_[ECU]

 
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Mars Center for Cocoa Science, Brazil
Location: 3206 2 > FP
 Dapeng Zhang, 2016

1._EET_45_[ECU] GC-03-017-2-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

2._VB_/REGINA GC-01-002-1-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._VB_/REGINA GC-01-002-1-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

4._VB_/REGINA GC-01-002-1-02

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

5._TSH_516

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

6._TSH_516

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

7._TSH_516

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

8._TSH_516

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

9._TSH_516

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

10._TSH_516

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

11._TSH_516

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

12._TSH_516

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

13._TSH_516

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

14._TSH_516

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

15._TSH_516

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

16._TSH_516

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

17._TSH_516 GC-08-208-6-04

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

18._TSH_516 GC-08-208-6-04

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._TSH_516 GC-08-208-6-04

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

20._TSH_516 GC-08-208-6-04

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._TSH_516 GC-08-208-6-04

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._TSH_516 GC-08-209-6-05

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

23._TSH_516 GC-08-209-6-05

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._TSH_516 GC-08-209-6-05

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

25._TSH_516 GC-08-209-6-05

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._TSH_516 GC-08-209-6-05

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

27._TSH_516 GC-08-209-6-05

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

28._TSH_516 GC-08-209-6-05

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

29._TSH_516

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

30._TSH_516 GC-08-208-6-04

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

31._TSH_516

93.1 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

32._TSH_516 GC-08-208-6-04

93.1 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

33._EB_1516 GC-08-088-2-11

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

34._EET_45_[ECU]

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3206 3 > FP
 Dapeng Zhang, 2016

35._EET_45_[ECU] GC-03-017-2-06

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

36._PA_150_[PER]

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

37._PA_150_[PER] GC-01-034-2-11

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

38._VB_/REGINA GC-01-002-1-02

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

39._VB_/REGINA GC-01-002-1-02

92.3 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

40._TSH_516 RUQ_1018

92.3 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

41._TSH_516 RUQ_1018

90.9 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

42._MARPER_20

90.4 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 47
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25